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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
78
ChIP-seq
28
DNase-seq
15
total RNA-seq
8
WGBS
3
ATAC-seq
3
pCHi-C
2
Hi-C
2
RRBS
1
small RNA-seq
Assay category
109
Transcription
78
DNA binding
31
DNA accessibility
10
DNA methylation
2
3D chromatin structure
Target of assay
55
histone
55
histone modification
34
broad histone mark
21
narrow histone mark
16
control
7
transcription factor
5
RNA binding protein
Date released
92
August, 2021
57
April, 2019
33
June, 2019
22
July, 2019
16
May, 2019
October, 2019
7
March, 2020
3
May, 2021
2
February, 2020
1
February, 2023
Available data
128
bam
113
bigWig
111
tsv
93
bed narrowPeak
89
bigBed narrowPeak
28
bed bed3+
28
bed broadPeak
28
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
2
bedpe bed3+
2
hic
Organism
233
Homo sapiens
Biosample type
221
tissue
11
primary cell
1
in vitro differentiated cells
Organ
928
pancreas
784
liver
680
connective tissue
490
adipose tissue
489
epithelium
345
heart
324
kidney
200
brain
vasculature
183
blood vessel
159
bone element
115
artery
96
musculature of body
69
blood
69
bodily fluid
53
limb
40
eye
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
233
AMP
Genome assembly (visualization)
112
GRCh38
108
hg19
Lab
233
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
organ_slims!
vasculature
month_released!
October, 2019
BIOSAMPLE
ASSAY
233 results
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single cell RNA-seq
ChIP-seq
DNase-seq
total RNA-seq
WGBS
ATAC-seq
pCHi-C
Hi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
35
3
3
4
2
1
1
1
heart right ventricle
17
13
1
1
2
1
1
heart
1
9
18
2
1
1
right cardiac atrium
18
6
1
1
left cardiac atrium
18
1
+ See 9 more…
primary cell
cardiac fibroblast
5
3
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
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