Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
76
ChIP-seq
6
WGBS
5
pCHi-C
5
total RNA-seq
3
ATAC-seq
3
Hi-C
2
RRBS
1
RNA microarray
Assay category
98
Transcription
76
DNA binding
8
DNA methylation
3
3D chromatin structure
3
DNA accessibility
Target of assay
44
control
32
histone
32
histone modification
20
broad histone mark
12
narrow histone mark
Date released
93
August, 2021
41
August, 2017
18
October, 2018
11
April, 2019
6
March, 2020
6
May, 2019
5
February, 2020
4
July, 2019
2
February, 2021
2
February, 2023
2
June, 2019
2
October, 2019
1
August, 2018
1
January, 2018
Available data
101
tsv
39
bam
21
fastq
10
tagAlign
4
bedpe bed3+
4
bigWig
3
bed narrowPeak
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bigBed narrowPeak
Organism
193
Homo sapiens
Biosample type
188
tissue
3
primary cell
2
cell line
1
in vitro differentiated cells
Organ
311
pancreas
260
liver
230
epithelium
149
kidney
127
heart
118
connective tissue
93
bone element
69
brain
67
adipose tissue
55
eye
45
vasculature
43
blood vessel
43
musculature of body
26
limb
20
lung
15
blood
15
bodily fluid
13
artery
12
nerve
10
vein
9
spleen
8
embryo
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
194
AMP
Genome assembly (visualization)
GRCh38
614
hg19
Lab
194
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
assembly!
GRCh38
BIOSAMPLE
ASSAY
194 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
ChIP-seq
WGBS
pCHi-C
total RNA-seq
ATAC-seq
Hi-C
RRBS
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
heart left ventricle
18
7
2
1
1
1
heart right ventricle
17
2
1
1
right cardiac atrium
18
1
1
left cardiac atrium
18
+ See 14 more…
primary cell
cardiac fibroblast
2
1
cell line
smooth muscle cell of the coronary artery
2
in vitro differentiated cells
white fat cell
1
See all biosamples
Download