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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
157
ChIP-seq
99
single cell RNA-seq
74
total RNA-seq
49
ATAC-seq
30
DNase-seq
10
WGBS
4
Hi-C
4
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
174
Transcription
157
DNA binding
79
DNA accessibility
11
DNA methylation
4
3D chromatin structure
Target of assay
112
histone
112
histone modification
73
broad histone mark
39
narrow histone mark
32
control
13
transcription factor
7
RNA binding protein
Date released
98
August, 2021
66
February, 2021
66
May, 2019
57
April, 2019
36
February, 2023
34
October, 2019
28
June, 2019
26
July, 2019
10
March, 2020
5
February, 2020
3
May, 2021
Available data
278
bam
238
bigWig
204
bed narrowPeak
177
tsv
145
bigBed narrowPeak
30
bed bed3+
30
bed broadPeak
30
bigBed broadPeak
8
bed bedMethyl
8
bigBed bedMethyl
6
tagAlign
4
bedpe bed3+
4
hic
Organism
429
Homo sapiens
Biosample type
362
tissue
66
cell line
primary cell
1
in vitro differentiated cells
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
340
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
429
AMP
Genome assembly (visualization)
280
GRCh38
242
hg19
Lab
429
AMP-T2D consortium
biosample_type!
primary cell
BIOSAMPLE
ASSAY
429 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
35
18
3
2
3
4
1
1
1
coronary artery
5
1
36
2
heart
14
1
4
18
1
1
1
heart right ventricle
13
17
1
1
2
1
1
tibial artery
23
1
1
2
+ See 15 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
in vitro differentiated cells
cardiac fibroblast
1
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