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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
57
total RNA-seq
20
ChIP-seq
8
ATAC-seq
8
DNase-seq
3
Hi-C
single cell RNA-seq
2
RRBS
Assay category
57
Transcription
20
DNA binding
16
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
8
transcription factor
7
control
5
histone
5
histone modification
5
narrow histone mark
4
RNA binding protein
Date released
66
February, 2021
13
June, 2019
9
July, 2019
9
November, 2017
1
May, 2021
Available data
93
bam
84
bigWig
57
tsv
29
bed narrowPeak
17
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
11
bed bed3+
9
fastq
6
tagAlign
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
Organism
98
Homo sapiens
Biosample type
tissue
66
cell line
31
primary cell
1
in vitro differentiated cells
Organ
439
epithelium
430
liver
367
pancreas
133
connective tissue
103
vasculature
97
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
55
kidney
37
embryo
22
vein
18
brain
14
musculature of body
5
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
98
AMP
Genome assembly (visualization)
93
hg19
86
GRCh38
Lab
98
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
assay_title!
single cell RNA-seq
biosample_type!
tissue
BIOSAMPLE
ASSAY
98 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
RRBS
cell line
smooth muscle cell of the coronary artery
52
6
8
primary cell
cardiac fibroblast
5
3
1
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
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in vitro differentiated cells
cardiac fibroblast
1
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