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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
115
ChIP-seq
93
single cell RNA-seq
38
ATAC-seq
15
total RNA-seq
13
DNase-seq
8
WGBS
5
pCHi-C
Assay category
115
DNA binding
108
Transcription
51
DNA accessibility
8
DNA methylation
Target of assay
70
histone
70
histone modification
45
broad histone mark
45
control
25
narrow histone mark
Date released
92
August, 2021
76
November, 2017
36
February, 2023
15
February, 2020
15
June, 2019
10
April, 2019
10
October, 2017
9
July, 2019
9
May, 2019
8
October, 2019
5
March, 2020
2
February, 2021
Available data
117
bam
112
tsv
100
bed narrowPeak
77
tagAlign
72
bigWig
65
bigBed narrowPeak
13
bed bed3+
13
bed broadPeak
13
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
4
fastq
Organism
287
Homo sapiens
Biosample type
282
tissue
3
primary cell
2
cell line
Organ
288
pancreas
225
kidney
213
epithelium
166
liver
165
heart
122
brain
95
connective tissue
89
bone element
71
blood vessel
71
vasculature
65
adipose tissue
48
artery
27
eye
26
limb
23
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
11
spleen
8
embryo
5
gonad
5
ovary
5
vein
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
287
AMP
Genome assembly (visualization)
443
GRCh38
hg19
Lab
287
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
assembly!
hg19
BIOSAMPLE
ASSAY
287 results
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ChIP-seq
single cell RNA-seq
ATAC-seq
total RNA-seq
DNase-seq
WGBS
pCHi-C
tissue
coronary artery
2
35
1
heart left ventricle
6
18
4
1
heart right ventricle
2
17
2
1
layer of hippocampus
22
right cardiac atrium
1
18
1
1
+ See 43 more…
primary cell
cardiac fibroblast
2
1
cell line
smooth muscle cell of the coronary artery
2
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