Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
298
ChIP-seq
93
single cell RNA-seq
85
total RNA-seq
54
DNase-seq
51
ATAC-seq
8
WGBS
5
pCHi-C
5
small RNA-seq
3
Hi-C
2
RRBS
1
FAIRE-seq
Assay category
298
DNA binding
183
Transcription
106
DNA accessibility
10
DNA methylation
3
3D chromatin structure
Target of assay
244
histone
244
histone modification
137
narrow histone mark
107
broad histone mark
43
control
11
transcription factor
5
RNA binding protein
Date released
94
October, 2019
92
August, 2021
82
November, 2017
66
February, 2021
57
April, 2019
52
June, 2019
49
May, 2019
37
February, 2023
31
July, 2019
16
October, 2017
15
February, 2020
9
March, 2020
3
May, 2021
2
November, 2018
Available data
425
bam
376
bigWig
337
bed narrowPeak
204
bigBed narrowPeak
187
tsv
124
tagAlign
63
bed broadPeak
54
bed bed3+
54
bigBed broadPeak
12
fastq
8
bed bedMethyl
8
bigBed bedMethyl
3
bedpe bed3+
3
hic
1
bed bed3
1
tagAlign bed3+
Organism
605
Homo sapiens
Biosample type
538
tissue
66
cell line
primary cell
1
in vitro differentiated cells
Organ
777
liver
645
connective tissue
600
pancreas
489
adipose tissue
340
heart
318
kidney
265
brain
199
blood vessel
199
vasculature
158
bone element
139
artery
122
limb
118
epithelium
82
musculature of body
61
blood
61
bodily fluid
56
eye
43
nerve
37
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
605
AMP
Genome assembly (visualization)
419
GRCh38
321
hg19
Lab
605
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
biosample_type!
primary cell
BIOSAMPLE
ASSAY
605 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
DNase-seq
ATAC-seq
WGBS
pCHi-C
small RNA-seq
Hi-C
RRBS
FAIRE-seq
tissue
heart left ventricle
35
18
3
3
2
4
1
1
1
coronary artery
5
1
2
36
heart
14
1
4
18
1
1
1
brain
20
1
14
1
1
heart right ventricle
13
17
1
1
2
1
1
+ See 92 more…
cell line
smooth muscle cell of the coronary artery
6
52
8
in vitro differentiated cells
cardiac fibroblast
1
See all biosamples
Download