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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
DNase-seq
11
ChIP-seq
4
ATAC-seq
2
Capture-C
1
Hi-C
1
pCHi-C
Assay category
39
DNA accessibility
11
DNA binding
1
3D chromatin structure
Target of assay
10
transcription factor
1
control
Date released
33
June, 2019
11
August, 2017
4
February, 2023
2
August, 2021
1
February, 2021
1
July, 2019
1
November, 2018
1
November, 2020
Available data
793
bam
785
bigWig
638
tsv
260
bed narrowPeak
116
bigBed narrowPeak
101
fastq
54
bed bed3+
37
bed broadPeak
36
bigBed broadPeak
28
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
6
bed bed3
4
bed bedgraph
4
bedpe bed3+
3
hic
1
hdf5
Organism
54
Homo sapiens
Biosample type
33
tissue
13
in vitro differentiated cells
8
primary cell
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
27
connective tissue
21
epithelium
18
ureter
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
54
AMP
Genome assembly (visualization)
51
hg19
46
GRCh38
Lab
52
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
Audit category:
4
inconsistent control read length
month_released!
February, 2020
BIOSAMPLE
ASSAY
54 results
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DNase-seq
ChIP-seq
ATAC-seq
Capture-C
Hi-C
pCHi-C
tissue
heart
18
white adipose tissue
4
heart left ventricle
3
coronary artery
2
omental fat pad
2
+ See 3 more…
in vitro differentiated cells
adipocyte
7
1
1
immature adipocyte
2
osteoblast
1
preadipocyte
1
primary cell
cardiac fibroblast
3
brain pericyte
1
1
osteoblast
1
1
hepatic stellate cell
1
See all biosamples
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