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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
93
single cell RNA-seq
71
ChIP-seq
69
total RNA-seq
47
ATAC-seq
27
DNase-seq
8
WGBS
3
Hi-C
3
pCHi-C
1
RRBS
1
small RNA-seq
Assay category
163
Transcription
74
DNA accessibility
71
DNA binding
9
DNA methylation
3
3D chromatin structure
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
control
11
transcription factor
5
RNA binding protein
Date released
92
August, 2021
64
February, 2021
47
April, 2019
36
February, 2023
27
June, 2019
22
July, 2019
15
May, 2019
8
October, 2019
7
March, 2020
3
February, 2020
2
May, 2021
Available data
182
bam
175
bigWig
165
tsv
145
bed narrowPeak
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
4
tagAlign
3
bedpe bed3+
3
hic
Organism
323
Homo sapiens
Biosample type
257
tissue
64
cell line
2
primary cell
Organ
893
pancreas
683
liver
connective tissue
494
epithelium
467
adipose tissue
342
kidney
333
heart
255
brain
214
vasculature
209
blood vessel
159
bone element
132
artery
105
limb
90
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
323
AMP
Genome assembly (visualization)
217
GRCh38
179
hg19
Lab
323
AMP-T2D consortium
target.investigated_as!
control
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
323 results
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single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
Hi-C
pCHi-C
RRBS
small RNA-seq
tissue
heart left ventricle
18
29
3
2
3
4
1
1
1
coronary artery
3
1
36
2
heart
1
12
4
18
1
1
1
heart right ventricle
17
11
1
1
2
1
1
right cardiac atrium
18
5
1
1
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cell line
smooth muscle cell of the coronary artery
4
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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