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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
42
ChIP-seq
8
snATAC-seq
2
pCHi-C
1
ATAC-seq
Assay category
42
DNA binding
9
DNA accessibility
Target of assay
37
transcription factor
4
RNA binding protein
4
chromatin remodeller
3
control
Date released
27
December, 2018
January, 2019
15
November, 2018
8
January, 2021
2
March, 2020
1
January, 2018
Available data
42
bam
42
fastq
40
bigWig
39
bed narrowPeak
39
bigBed narrowPeak
2
tsv
Organism
53
Homo sapiens
Biosample type
43
cell line
8
primary cell
2
tissue
Organ
946
pancreas
786
liver
684
connective tissue
524
epithelium
491
adipose tissue
393
heart
354
kidney
286
brain
236
vasculature
230
blood vessel
159
bone element
141
artery
122
limb
96
musculature of body
61
eye
51
blood
51
bodily fluid
43
nerve
37
embryo
22
vein
20
lung
18
spleen
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
45
AMP
8
T1D
Genome assembly (visualization)
40
hg19
39
GRCh38
Lab
45
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
month_released!
January, 2019
BIOSAMPLE
ASSAY
53 results
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Clear Filters
ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
cell line
GM12878
42
1
primary cell
peripheral blood mononuclear cell
8
tissue
sigmoid colon
1
small intestine
1
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