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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
Assay category
61
DNA binding
Target of assay
348
transcription factor
133
histone modification
132
histone
120
control
89
recombinant protein
75
narrow histone mark
61
RNA binding protein
57
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
34
November, 2017
19
November, 2018
4
December, 2017
1
April, 2019
1
August, 2021
1
June, 2019
1
May, 2019
Available data
60
bam
58
bed narrowPeak
58
bigWig
57
bigBed narrowPeak
57
fastq
4
bed broadPeak
4
bigBed broadPeak
1
tar
Organism
61
Homo sapiens
Biosample type
54
cell line
3
tissue
2
in vitro differentiated cells
2
primary cell
Organ
58
liver
11
heart
10
blood
10
bodily fluid
10
connective tissue
9
pancreas
8
epithelium
5
adipose tissue
5
vasculature
4
blood vessel
3
brain
3
kidney
1
artery
1
eye
Project
61
AMP
Genome assembly (visualization)
57
hg19
53
GRCh38
Lab
60
AMP-T2D consortium
1
Bing Ren, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
2
missing controlled_by
Audit category:
6
inconsistent control read length
3
inconsistent control run_type
assay_slims!
3D chromatin structure
BIOSAMPLE
ASSAY
61 results
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ChIP-seq
cell line
HepG2
54
tissue
kidney
1
liver
1
right lobe of liver
1
in vitro differentiated cells
hepatocyte
2
primary cell
epithelial cell of proximal tubule
1
kidney epithelial cell
1
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