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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
184
total RNA-seq
134
single cell RNA-seq
1
small RNA-seq
Assay category
319
Transcription
273
DNA accessibility
166
DNA binding
54
DNA methylation
9
3D chromatin structure
Date released
57
August, 2021
47
September, 2023
39
February, 2023
33
April, 2018
33
July, 2018
31
February, 2021
26
September, 2018
16
September, 2020
7
July, 2019
6
December, 2019
6
May, 2021
6
October, 2019
3
August, 2018
3
May, 2023
2
March, 2020
2
October, 2018
1
June, 2018
1
November, 2019
Available data
158
tsv
151
bam
151
bigWig
147
fastq
62
txt
5
csv
Organism
319
Homo sapiens
Biosample type
163
primary cell
117
tissue
37
cell line
2
in vitro differentiated cells
Organ
481
connective tissue
479
pancreas
401
adipose tissue
201
epithelium
193
liver
166
heart
125
kidney
67
blood vessel
67
vasculature
62
bone element
58
artery
24
brain
19
eye
14
embryo
9
lung
9
musculature of body
7
limb
5
nerve
4
skeleton
1
pericardium
1
spinal cord
Project
217
AMP
53
HPAP
47
KPMP
2
T1D
Genome assembly (visualization)
151
GRCh38
151
hg19
Lab
159
AMP-T2D consortium
60
Katalin Susztak, Upenn
53
Klaus Kaestner, Upenn
47
KPMP
Audit category:
38
inconsistent ontology term
5
audit script error
BIOSAMPLE
ASSAY
319 results
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Clear Filters
total RNA-seq
single cell RNA-seq
small RNA-seq
primary cell
pancreatic alpha cell
52
12
pancreatic beta cell
21
12
pancreatic acinar cell
4
12
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 11 more…
tissue
kidney
49
64
metanephros
1
1
pigmented layer of retina
2
cell line
EndoC_BH1
33
RCC 7860 HIF1a re-expression
1
RCC 7860 HIF2a over-expression
1
RCC 7860 vector
1
glomerular visceral epithelial cell
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
See all biosamples
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