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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
69
DNase-seq
64
single cell RNA-seq
54
total RNA-seq
37
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
2
STARR-seq
pCHi-C
1
FAIRE-seq
1
Hi-C
RRBS
1
small RNA-seq
Assay category
151
DNA accessibility
119
Transcription
37
DNA binding
1
3D chromatin structure
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
9
control
8
transcription factor
7
recombinant protein
1
RNA binding protein
Date released
130
August, 2021
68
June, 2019
47
September, 2023
23
April, 2019
19
October, 2019
14
May, 2023
8
February, 2021
3
December, 2019
3
July, 2019
Available data
161
bed narrowPeak
113
bam
103
bigWig
88
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
16
tsv
5
csv
1
hic
Organism
315
Homo sapiens
Biosample type
298
tissue
primary cell
17
cell line
Organ
773
liver
642
connective tissue
597
pancreas
487
adipose tissue
376
heart
315
kidney
262
brain
198
blood vessel
198
vasculature
158
bone element
139
artery
122
limb
118
epithelium
77
musculature of body
61
blood
61
bodily fluid
52
eye
43
nerve
37
embryo
24
spleen
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
268
AMP
47
KPMP
Genome assembly (visualization)
177
GRCh38
103
hg19
Lab
142
Katalin Susztak, Upenn
124
AMP-T2D consortium
47
KPMP
2
Bing Ren, UCSD
Audit category:
13
inconsistent ontology term
7
audit script error
assay_title!
pCHi-C
RRBS
biosample_type!
primary cell
BIOSAMPLE
ASSAY
315 results
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Clear Filters
ATAC-seq
DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
STARR-seq
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney
75
13
64
49
27
6
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 10 more…
cell line
RCC 7860 HIF1a re-expression
1
4
RCC 7860 HIF2a over-expression
1
3
RCC 7860 vector
1
3
HEK293T
2
glomerular visceral epithelial cell
1
1
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