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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
604
ChIP-seq
249
total RNA-seq
98
ATAC-seq
87
DNase-seq
65
single cell RNA-seq
6
RRBS
6
snATAC-seq
5
Hi-C
5
WGBS
5
pCHi-C
4
STARR-seq
4
small RNA-seq
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
whole genome sequencing assay
Assay category
604
DNA binding
Target of assay
348
transcription factor
133
histone modification
132
histone
120
control
89
recombinant protein
75
narrow histone mark
61
RNA binding protein
57
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
63
December, 2017
50
May, 2020
49
November, 2018
48
August, 2017
26
October, 2019
23
April, 2019
22
August, 2021
5
May, 2019
3
June, 2019
Available data
562
bam
471
bigWig
452
bed narrowPeak
452
fastq
376
bigBed narrowPeak
86
tagAlign
58
bed broadPeak
58
bigBed broadPeak
6
bed bed3+
3
tar
Organism
604
Homo sapiens
Biosample type
388
cell line
182
tissue
19
primary cell
15
in vitro differentiated cells
Organ
552
liver
218
brain
218
pancreas
153
connective tissue
129
epithelium
102
vasculature
99
blood vessel
94
heart
73
adipose tissue
66
limb
60
blood
60
bodily fluid
52
kidney
39
musculature of body
35
nerve
34
artery
22
embryo
20
spleen
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
604
AMP
Genome assembly (visualization)
468
hg19
399
GRCh38
Lab
586
AMP-T2D consortium
18
Bing Ren, UCSD
Audit category:
27
inconsistent control
16
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
BIOSAMPLE
ASSAY
604 results
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ChIP-seq
cell line
HepG2
378
RCC 7860 HIF1a re-expression
4
RCC 7860 HIF2a over-expression
3
RCC 7860 vector
3
tissue
liver
145
kidney
27
right lobe of liver
10
primary cell
epithelial cell of proximal tubule
10
kidney epithelial cell
5
hepatocyte
4
in vitro differentiated cells
hepatocyte
15
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