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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
604
ChIP-seq
249
total RNA-seq
98
ATAC-seq
87
DNase-seq
65
single cell RNA-seq
6
RRBS
6
snATAC-seq
5
Hi-C
5
WGBS
5
pCHi-C
4
STARR-seq
4
small RNA-seq
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
whole genome sequencing assay
Assay category
87
DNA accessibility
6
DNA methylation
Date released
80
June, 2019
5
July, 2019
3
November, 2018
3
October, 2019
2
August, 2017
Available data
84
bam
84
bed narrowPeak
84
bigBed narrowPeak
84
bigWig
83
bed bed3+
83
bed broadPeak
83
bigBed broadPeak
6
bed bedMethyl
6
bigBed bedMethyl
4
fastq
Organism
93
Homo sapiens
Biosample type
74
tissue
18
primary cell
1
cell line
Organ
85
kidney
38
musculature of body
36
limb
34
brain
32
heart
25
epithelium
18
ureter
12
vasculature
10
connective tissue
10
pancreas
9
blood vessel
8
liver
5
eye
4
artery
2
adipose tissue
2
nerve
2
vein
1
pericardium
1
spleen
Project
93
AMP
Genome assembly (visualization)
84
GRCh38
83
hg19
Lab
93
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
BIOSAMPLE
ASSAY
93 results
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DNase-seq
RRBS
tissue
kidney
13
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 6 more…
primary cell
kidney tubule cell
3
epithelial cell of proximal tubule
1
1
glomerular visceral epithelial cell
2
hepatocyte
1
1
kidney epithelial cell
1
1
+ See 5 more…
cell line
glomerular visceral epithelial cell
1
See all biosamples
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