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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
604
ChIP-seq
249
total RNA-seq
98
ATAC-seq
87
DNase-seq
65
single cell RNA-seq
6
RRBS
6
snATAC-seq
5
Hi-C
5
WGBS
5
pCHi-C
4
STARR-seq
4
small RNA-seq
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
whole genome sequencing assay
Assay category
6
DNA methylation
5
3D chromatin structure
Date released
6
July, 2019
2
August, 2021
1
August, 2017
1
December, 2018
1
March, 2020
Available data
6
bed bedMethyl
6
bigBed bedMethyl
3
hic
2
bedpe bed3+
2
fastq
1
bed bed3+
1
bigWig
1
hdf5
Organism
11
Homo sapiens
Biosample type
5
primary cell
4
tissue
2
cell line
Organ
14
epithelium
11
musculature of body
11
pancreas
6
liver
6
vasculature
5
blood vessel
5
brain
5
heart
5
kidney
4
limb
2
connective tissue
2
vein
1
eye
1
pericardium
Project
11
AMP
Genome assembly (visualization)
10
hg19
Lab
9
AMP-T2D consortium
1
Bing Ren, UCSD
1
Katalin Susztak, Upenn
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
11 results
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RRBS
Hi-C
primary cell
endothelial cell of hepatic sinusoid
1
epithelial cell of proximal tubule
1
hepatocyte
1
kidney epithelial cell
1
renal cortical epithelial cell
1
tissue
kidney
1
1
liver
1
1
cell line
HepG2
2
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