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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
DNase-seq
24
ChIP-seq
5
total RNA-seq
4
RRBS
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
72
DNA accessibility
24
DNA binding
6
Transcription
4
DNA methylation
1
3D chromatin structure
Target of assay
22
histone
22
histone modification
12
broad histone mark
10
narrow histone mark
2
RNA binding protein
2
transcription factor
Date released
73
June, 2019
October, 2019
18
April, 2019
11
July, 2019
4
May, 2019
1
August, 2021
Available data
102
bam
102
bigWig
96
bed narrowPeak
96
bigBed narrowPeak
71
bed bed3+
71
bed broadPeak
71
bigBed broadPeak
6
tsv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
107
Homo sapiens
Biosample type
90
tissue
17
primary cell
Organ
650
pancreas
618
liver
586
connective tissue
425
adipose tissue
284
epithelium
180
heart
128
vasculature
122
blood vessel
107
kidney
86
brain
73
musculature of body
72
artery
70
bone element
55
blood
55
bodily fluid
44
limb
34
eye
29
embryo
18
ureter
14
spleen
12
skeleton
2
pericardium
1
vein
Project
107
AMP
Genome assembly (visualization)
183
GRCh38
107
hg19
Lab
106
AMP-T2D consortium
1
Katalin Susztak, Upenn
Audit category:
6
inconsistent ontology term
month_released!
October, 2019
BIOSAMPLE
ASSAY
107 results
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DNase-seq
ChIP-seq
total RNA-seq
RRBS
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney
13
18
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
8
+ See 5 more…
primary cell
kidney epithelial cell
1
4
1
1
epithelial cell of proximal tubule
1
2
1
1
renal cortical epithelial cell
1
1
1
glomerular endothelial cell
1
1
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