Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ChIP-seq
15
DNase-seq
10
total RNA-seq
4
RRBS
Assay category
20
DNA binding
15
DNA accessibility
10
Transcription
4
DNA methylation
Target of assay
12
histone
12
histone modification
7
narrow histone mark
5
broad histone mark
5
control
3
RNA binding protein
3
transcription factor
Date released
21
June, 2019
12
July, 2019
11
October, 2019
5
May, 2019
Available data
43
bam
38
bigWig
28
bed narrowPeak
22
bigBed narrowPeak
13
bed bed3+
13
bed broadPeak
13
bigBed broadPeak
10
tsv
4
bed bedMethyl
4
bigBed bedMethyl
Organism
49
Homo sapiens
Biosample type
605
tissue
85
cell line
49
primary cell
1
in vitro differentiated cells
Organ
402
epithelium
343
pancreas
39
connective tissue
36
kidney
36
vasculature
30
blood vessel
21
brain
21
vein
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
49
AMP
Genome assembly (visualization)
38
GRCh38
35
hg19
Lab
49
AMP-T2D consortium
Audit category:
14
inconsistent ontology term
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
49 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
RRBS
primary cell
epithelial cell of proximal tubule
10
1
1
1
cardiac fibroblast
5
3
1
kidney epithelial cell
5
1
1
1
kidney tubule cell
3
1
kidney glomerular epithelial cell
2
1
+ See 8 more…
See all biosamples
Download