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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
DNase-seq
75
ATAC-seq
64
single cell RNA-seq
54
total RNA-seq
25
ChIP-seq
6
snATAC-seq
3
RRBS
3
snDrop-seq
2
RNA microarray
2
STARR-seq
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
159
DNA accessibility
119
Transcription
25
DNA binding
3
DNA methylation
1
3D chromatin structure
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
4
control
1
RNA binding protein
1
transcription factor
Date released
130
August, 2021
77
June, 2019
47
September, 2023
23
April, 2019
October, 2019
14
May, 2023
10
July, 2019
8
February, 2021
3
December, 2019
2
May, 2019
Available data
162
bed narrowPeak
109
bam
104
bigWig
98
bigBed narrowPeak
77
bed bed3+
77
bed broadPeak
77
bigBed broadPeak
64
xls
62
txt
16
tsv
5
csv
3
bed bedMethyl
3
bigBed bedMethyl
1
hic
Organism
314
Homo sapiens
Biosample type
295
tissue
17
primary cell
2
cell line
Organ
847
pancreas
784
liver
661
connective tissue
489
adipose tissue
399
epithelium
379
heart
314
kidney
199
brain
188
vasculature
183
blood vessel
115
artery
87
musculature of body
75
bone element
69
blood
69
bodily fluid
52
limb
40
eye
31
embryo
25
spleen
20
lung
18
ureter
16
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
small intestine
1
spinal cord
1
vein
Project
267
AMP
47
KPMP
Genome assembly (visualization)
178
GRCh38
101
hg19
Lab
142
Katalin Susztak, Upenn
123
AMP-T2D consortium
47
KPMP
2
Bing Ren, UCSD
Audit category:
inconsistent ontology term
7
audit script error
audit.ERROR.category!
inconsistent ontology term
audit.ERROR.category!!
inconsistent ontology term
month_released!
October, 2019
BIOSAMPLE
ASSAY
314 results
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DNase-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
STARR-seq
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney
13
75
64
49
23
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 10 more…
primary cell
kidney epithelial cell
1
1
2
1
renal cortical epithelial cell
1
1
1
glomerular endothelial cell
1
1
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 3 more…
cell line
HEK293T
2
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