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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
109
ChIP-seq
Assay category
523
Transcription
169
DNA accessibility
109
DNA binding
9
DNA methylation
1
3D chromatin structure
Target of assay
60
histone
60
histone modification
35
broad histone mark
31
control
25
narrow histone mark
18
transcription factor
6
RNA binding protein
Date released
50
August, 2017
23
April, 2019
23
October, 2018
11
October, 2019
2
May, 2019
Available data
73
bam
47
bigWig
37
fastq
35
bed narrowPeak
26
bigBed narrowPeak
8
tagAlign
4
bed bed3+
1
bed broadPeak
Organism
109
Homo sapiens
Biosample type
100
tissue
9
primary cell
Organ
552
liver
216
brain
203
pancreas
142
connective tissue
130
heart
104
epithelium
102
vasculature
99
blood vessel
73
adipose tissue
66
limb
60
blood
60
bodily fluid
36
kidney
35
nerve
34
artery
31
musculature of body
20
spleen
18
embryo
17
vein
5
eye
4
gonad
4
ovary
1
lymph node
1
pituitary gland
Project
109
AMP
Genome assembly (visualization)
47
hg19
46
GRCh38
Lab
109
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
12
missing controlled_by
audit.ERROR.category!
inconsistent ontology term
BIOSAMPLE
ASSAY
109 results
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ChIP-seq
tissue
subcutaneous abdominal adipose tissue
36
kidney
27
subcutaneous adipose tissue
12
white adipose tissue
12
omental fat pad
11
+ See 1 more…
primary cell
epithelial cell of proximal tubule
7
kidney epithelial cell
2
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