Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
DNase-seq
75
ATAC-seq
single cell RNA-seq
56
total RNA-seq
42
ChIP-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
small RNA-seq
Assay category
162
DNA accessibility
57
Transcription
42
DNA binding
4
DNA methylation
3D chromatin structure
Target of assay
30
histone
30
histone modification
15
broad histone mark
15
narrow histone mark
9
control
3
RNA binding protein
3
transcription factor
Date released
119
August, 2021
81
June, 2019
23
April, 2019
15
October, 2019
11
July, 2019
11
May, 2023
5
May, 2019
3
February, 2021
2
December, 2019
Available data
175
bed narrowPeak
129
bam
119
bigWig
103
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
49
txt
13
tsv
4
bed bedMethyl
4
bigBed bedMethyl
Organism
270
Homo sapiens
Biosample type
234
tissue
36
primary cell
cell line
Organ
773
pancreas
679
connective tissue
491
adipose tissue
387
liver
368
epithelium
280
brain
270
kidney
191
heart
159
bone element
159
vasculature
153
blood vessel
118
limb
89
musculature of body
73
artery
61
eye
43
nerve
29
embryo
25
spleen
20
vein
18
ureter
16
skeleton
11
lung
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
270
AMP
Genome assembly (visualization)
193
GRCh38
116
hg19
Lab
140
AMP-T2D consortium
130
Katalin Susztak, Upenn
Audit category:
8
inconsistent ontology term
2
audit script error
biosample_type!
cell line
assay_slims!
3D chromatin structure
assay_title!
single cell RNA-seq
BIOSAMPLE
ASSAY
270 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
ATAC-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
FAIRE-seq
small RNA-seq
tissue
kidney
13
75
49
27
6
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 10 more…
primary cell
epithelial cell of proximal tubule
1
1
10
1
kidney epithelial cell
1
1
5
1
kidney tubule cell
3
1
kidney glomerular epithelial cell
2
1
renal cortical epithelial cell
1
1
1
+ See 3 more…
See all biosamples
Download