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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
DNase-seq
75
ATAC-seq
6
snATAC-seq
1
FAIRE-seq
Assay category
162
DNA accessibility
121
Transcription
42
DNA binding
4
DNA methylation
1
3D chromatin structure
Date released
78
June, 2019
70
August, 2021
11
May, 2023
2
October, 2019
1
July, 2019
Available data
143
bed narrowPeak
79
bam
79
bigBed narrowPeak
79
bigWig
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
Organism
162
Homo sapiens
Biosample type
150
tissue
12
primary cell
cell line
Organ
162
kidney
153
pancreas
103
epithelium
69
heart
50
vasculature
48
blood vessel
44
limb
41
artery
37
brain
35
musculature of body
34
connective tissue
32
eye
28
liver
18
ureter
12
bone element
12
skeleton
10
lung
8
adipose tissue
8
blood
8
bodily fluid
3
nerve
3
vein
2
spleen
1
pituitary gland
1
skin of body
Project
162
AMP
Genome assembly (visualization)
153
GRCh38
72
hg19
Lab
81
AMP-T2D consortium
81
Katalin Susztak, Upenn
Audit category:
1
inconsistent ontology term
biosample_type!
cell line
BIOSAMPLE
ASSAY
162 results
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DNase-seq
ATAC-seq
snATAC-seq
FAIRE-seq
tissue
kidney
13
75
6
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 4 more…
primary cell
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
epithelial cell of proximal tubule
1
glomerular endothelial cell
1
+ See 3 more…
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