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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
DNase-seq
75
ATAC-seq
64
single cell RNA-seq
total RNA-seq
42
ChIP-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
162
DNA accessibility
65
Transcription
42
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
30
histone
30
histone modification
15
broad histone mark
15
narrow histone mark
9
control
3
RNA binding protein
3
transcription factor
Date released
81
June, 2019
79
August, 2021
47
September, 2023
23
April, 2019
14
May, 2023
13
October, 2019
8
February, 2021
6
July, 2019
5
May, 2019
3
December, 2019
Available data
175
bed narrowPeak
122
bam
112
bigWig
103
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
13
txt
11
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
279
Homo sapiens
Biosample type
249
tissue
30
primary cell
cell line
Organ
484
pancreas
348
epithelium
307
heart
279
kidney
269
brain
215
liver
210
connective tissue
161
vasculature
155
blood vessel
115
limb
97
bone element
93
adipose tissue
90
musculature of body
71
artery
42
eye
38
nerve
25
spleen
23
embryo
22
vein
20
lung
18
ureter
12
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
232
AMP
47
KPMP
Genome assembly (visualization)
186
GRCh38
110
hg19
Lab
139
AMP-T2D consortium
93
Katalin Susztak, Upenn
47
KPMP
Audit category:
8
inconsistent ontology term
7
audit script error
biosample_type!
cell line
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
279 results
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DNase-seq
ATAC-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney
13
75
64
27
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
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primary cell
epithelial cell of proximal tubule
1
10
1
kidney epithelial cell
1
5
1
kidney tubule cell
3
glomerular visceral epithelial cell
2
kidney glomerular epithelial cell
2
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