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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
71
DNase-seq
32
ChIP-seq
7
total RNA-seq
4
RRBS
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
72
DNA accessibility
32
DNA binding
8
Transcription
4
DNA methylation
1
3D chromatin structure
Target of assay
30
histone
30
histone modification
15
broad histone mark
15
narrow histone mark
2
RNA binding protein
2
transcription factor
Date released
73
June, 2019
18
April, 2019
11
July, 2019
10
October, 2019
4
May, 2019
1
August, 2021
Available data
112
bam
112
bigWig
104
bed narrowPeak
96
bigBed narrowPeak
71
bed bed3+
71
bed broadPeak
71
bigBed broadPeak
8
tsv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
117
Homo sapiens
Biosample type
92
tissue
25
primary cell
cell line
Organ
600
pancreas
589
connective tissue
426
adipose tissue
295
liver
259
epithelium
164
brain
124
heart
117
kidney
101
vasculature
96
limb
95
blood vessel
72
musculature of body
70
bone element
34
eye
31
nerve
29
artery
21
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
117
AMP
Genome assembly (visualization)
193
GRCh38
117
hg19
Lab
116
AMP-T2D consortium
1
Katalin Susztak, Upenn
Audit category:
6
inconsistent ontology term
biosample_type!
cell line
assay_title!
snATAC-seq
BIOSAMPLE
ASSAY
117 results
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DNase-seq
ChIP-seq
total RNA-seq
RRBS
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney
13
20
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
8
+ See 5 more…
primary cell
epithelial cell of proximal tubule
1
8
1
1
kidney epithelial cell
1
4
1
1
renal cortical epithelial cell
1
1
1
glomerular endothelial cell
1
1
kidney glomerular epithelial cell
1
+ See 1 more…
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