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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
ATAC-seq
69
DNase-seq
64
single cell RNA-seq
50
total RNA-seq
47
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
2
WGBS
1
FAIRE-seq
1
Hi-C
1
RRBS
1
pCHi-C
1
small RNA-seq
Assay category
152
DNA accessibility
115
Transcription
47
DNA binding
3
DNA methylation
1
3D chromatin structure
Target of assay
26
histone
26
histone modification
14
broad histone mark
14
control
12
narrow histone mark
7
transcription factor
3
other context
3
other post-translational modification
1
RNA binding protein
Date released
128
August, 2021
68
June, 2019
47
September, 2023
23
April, 2019
14
May, 2023
9
November, 2018
8
February, 2021
7
December, 2018
7
January, 2019
4
July, 2019
4
October, 2019
3
December, 2019
1
March, 2020
1
October, 2017
Available data
167
bed narrowPeak
122
bam
107
bigWig
100
bigBed narrowPeak
69
bed bed3+
69
bed broadPeak
69
bigBed broadPeak
64
xls
62
txt
24
fastq
13
tsv
5
csv
3
bed bedMethyl
3
bigBed bedMethyl
1
hic
Organism
324
Homo sapiens
Biosample type
324
tissue
primary cell
cell line
Organ
645
connective tissue
508
pancreas
489
adipose tissue
376
liver
314
heart
299
kidney
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
82
musculature of body
73
artery
56
eye
43
nerve
39
epithelium
29
embryo
25
spleen
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
277
AMP
47
KPMP
Genome assembly (visualization)
181
GRCh38
106
hg19
Lab
142
Katalin Susztak, Upenn
135
AMP-T2D consortium
47
KPMP
Audit category:
7
audit script error
biosample_type!
cell line
primary cell
BIOSAMPLE
ASSAY
324 results
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ATAC-seq
DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
WGBS
FAIRE-seq
Hi-C
RRBS
pCHi-C
small RNA-seq
tissue
kidney
75
13
64
49
27
6
1
1
1
spleen
1
1
20
2
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
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