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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
49
total RNA-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
DNase-seq
2
RNA microarray
1
Hi-C
Assay category
113
Transcription
83
DNA accessibility
4
DNA methylation
1
3D chromatin structure
Date released
128
August, 2021
47
September, 2023
14
May, 2023
8
February, 2021
4
July, 2019
3
December, 2019
2
October, 2019
Available data
175
bed narrowPeak
bam
119
bigWig
103
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
18
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
206
Homo sapiens
Biosample type
201
tissue
5
primary cell
cell line
Organ
228
pancreas
206
kidney
179
epithelium
142
heart
93
bone element
91
connective tissue
75
liver
54
eye
51
vasculature
50
blood vessel
49
adipose tissue
43
brain
39
artery
39
musculature of body
20
lung
8
blood
8
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
nerve
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
159
AMP
47
KPMP
Genome assembly (visualization)
75
GRCh38
5
hg19
Lab
142
Katalin Susztak, Upenn
47
KPMP
17
AMP-T2D consortium
Audit category:
7
audit script error
1
inconsistent ontology term
biosample_type!
cell line
files.file_type!
bam
BIOSAMPLE
ASSAY
206 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
RRBS
snDrop-seq
DNase-seq
RNA microarray
Hi-C
tissue
kidney
75
64
49
6
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
+ See 1 more…
primary cell
epithelial cell of proximal tubule
1
kidney epithelial cell
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
renal cortical epithelial cell
1
See all biosamples
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