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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
DNase-seq
64
ATAC-seq
32
ChIP-seq
1
FAIRE-seq
Assay category
143
DNA accessibility
32
DNA binding
Target of assay
30
histone
30
histone modification
15
broad histone mark
15
narrow histone mark
2
RNA binding protein
2
transcription factor
Date released
80
June, 2019
64
August, 2021
18
April, 2019
8
October, 2019
4
May, 2019
1
July, 2019
Available data
175
bed narrowPeak
129
bam
119
bigWig
103
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
18
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
175
Homo sapiens
Biosample type
153
tissue
22
primary cell
cell line
Organ
203
brain
193
pancreas
179
heart
175
kidney
136
epithelium
133
liver
121
vasculature
117
blood vessel
92
limb
75
connective tissue
62
artery
60
musculature of body
33
eye
27
nerve
18
ureter
14
embryo
14
spleen
13
adipose tissue
13
vein
8
bone element
8
skeleton
1
pituitary gland
Project
175
AMP
Genome assembly (visualization)
174
GRCh38
104
hg19
Lab
111
AMP-T2D consortium
64
Katalin Susztak, Upenn
Audit category:
5
inconsistent ontology term
biosample_type!
cell line
BIOSAMPLE
ASSAY
175 results
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DNase-seq
ATAC-seq
ChIP-seq
FAIRE-seq
tissue
kidney
13
64
20
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 4 more…
primary cell
epithelial cell of proximal tubule
1
8
kidney epithelial cell
1
4
glomerular visceral epithelial cell
2
kidney tubule cell
2
glomerular endothelial cell
1
+ See 3 more…
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