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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
56
total RNA-seq
39
ChIP-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
DNase-seq
2
RNA microarray
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
121
Transcription
84
DNA accessibility
39
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
29
histone
29
histone modification
15
broad histone mark
14
narrow histone mark
8
control
2
RNA binding protein
2
transcription factor
Date released
128
August, 2021
June, 2019
47
September, 2023
23
April, 2019
15
October, 2019
14
May, 2023
11
July, 2019
8
February, 2021
5
May, 2019
3
December, 2019
Available data
95
bed narrowPeak
64
xls
62
txt
48
bam
39
bigWig
23
bigBed narrowPeak
18
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
254
Homo sapiens
Biosample type
231
tissue
23
primary cell
cell line
Organ
850
pancreas
666
connective tissue
490
adipose tissue
425
epithelium
388
liver
292
heart
256
brain
254
kidney
163
vasculature
159
blood vessel
159
bone element
90
limb
73
artery
54
eye
53
musculature of body
43
nerve
29
embryo
25
spleen
22
vein
20
lung
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
207
AMP
47
KPMP
Genome assembly (visualization)
113
GRCh38
44
hg19
Lab
142
Katalin Susztak, Upenn
65
AMP-T2D consortium
47
KPMP
Audit category:
7
audit script error
4
inconsistent ontology term
biosample_type!
cell line
month_released!
June, 2019
BIOSAMPLE
ASSAY
254 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
DNase-seq
RNA microarray
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney
75
64
49
27
6
1
1
1
metanephros
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
+ See 2 more…
primary cell
epithelial cell of proximal tubule
1
7
1
kidney epithelial cell
1
5
1
kidney glomerular epithelial cell
1
1
kidney tubule cell
1
1
renal cortical epithelial cell
1
1
+ See 1 more…
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