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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
68
DNase-seq
64
single cell RNA-seq
50
total RNA-seq
27
ChIP-seq
6
snATAC-seq
3
snDrop-seq
1
FAIRE-seq
1
Hi-C
1
RNA microarray
1
RRBS
1
small RNA-seq
Assay category
150
DNA accessibility
115
Transcription
27
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
6
control
1
RNA binding protein
1
transcription factor
Date released
128
August, 2021
68
June, 2019
47
September, 2023
23
April, 2019
14
May, 2023
8
February, 2021
4
July, 2019
4
October, 2019
2
December, 2019
Available data
153
bed narrowPeak
98
bam
91
bigWig
87
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
11
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
298
Homo sapiens
Biosample type
298
tissue
cell line
Organ
854
pancreas
684
connective tissue
491
adipose tissue
epithelium
390
liver
335
kidney
327
heart
286
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
251
AMP
47
KPMP
Genome assembly (visualization)
165
GRCh38
92
hg19
Lab
142
Katalin Susztak, Upenn
109
AMP-T2D consortium
47
KPMP
Audit category:
6
audit script error
biosample_type!
cell line
organ_slims!
epithelium
BIOSAMPLE
ASSAY
298 results
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ATAC-seq
DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
FAIRE-seq
Hi-C
RNA microarray
RRBS
small RNA-seq
tissue
kidney
75
13
64
49
27
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
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