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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
112
ATAC-seq
84
DNase-seq
70
ChIP-seq
66
single cell RNA-seq
60
total RNA-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
203
DNA accessibility
127
Transcription
70
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
50
histone
50
histone modification
29
broad histone mark
21
narrow histone mark
16
control
4
RNA binding protein
4
transcription factor
Date released
130
August, 2021
83
June, 2019
47
September, 2023
41
October, 2019
35
February, 2023
23
April, 2019
14
July, 2019
14
May, 2023
10
May, 2019
8
February, 2021
3
December, 2019
2
February, 2020
Available data
237
bed narrowPeak
165
bam
148
bigWig
128
bigBed narrowPeak
82
bed bed3+
82
bed broadPeak
82
bigBed broadPeak
64
xls
62
txt
24
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
410
Homo sapiens
Biosample type
372
tissue
cell line
38
primary cell
Organ
854
pancreas
684
connective tissue
491
adipose tissue
445
epithelium
390
liver
335
kidney
327
heart
286
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
363
AMP
47
KPMP
Genome assembly (visualization)
257
GRCh38
146
hg19
Lab
221
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
Audit category:
8
inconsistent ontology term
7
audit script error
biosample_type!
cell line
BIOSAMPLE
ASSAY
410 results
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ATAC-seq
DNase-seq
ChIP-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney
75
13
27
64
49
6
1
1
1
coronary artery
36
2
5
1
tibial artery
1
2
23
1
renal cortex interstitium
11
renal pelvis
10
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primary cell
epithelial cell of proximal tubule
1
10
1
1
kidney epithelial cell
1
5
1
1
kidney tubule cell
3
1
kidney glomerular epithelial cell
2
1
renal cortical epithelial cell
1
1
1
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