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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
113
DNase-seq
82
ChIP-seq
76
ATAC-seq
65
single cell RNA-seq
62
total RNA-seq
9
RRBS
7
Hi-C
7
snATAC-seq
3
small RNA-seq
3
snDrop-seq
2
RNA microarray
1
FAIRE-seq
1
WGBS
1
pCHi-C
Assay category
197
DNA accessibility
130
Transcription
82
DNA binding
10
DNA methylation
7
3D chromatin structure
Target of assay
64
histone
64
histone modification
35
broad histone mark
29
narrow histone mark
15
control
3
RNA binding protein
3
transcription factor
Date released
128
August, 2021
124
June, 2019
47
September, 2023
26
August, 2017
23
April, 2019
21
July, 2019
16
October, 2019
14
May, 2023
12
May, 2019
8
February, 2021
5
March, 2020
3
December, 2019
2
February, 2020
2
May, 2022
1
January, 2018
Available data
235
bed narrowPeak
187
bigWig
186
bam
150
bigBed narrowPeak
124
bed broadPeak
112
bed bed3+
111
bigBed broadPeak
64
xls
63
txt
27
tsv
15
tagAlign
8
bed bedMethyl
8
bigBed bedMethyl
5
csv
3
hic
2
bedpe bed3+
2
fastq
Organism
432
Homo sapiens
Biosample type
382
tissue
50
primary cell
cell line
Organ
854
pancreas
684
connective tissue
491
adipose tissue
445
epithelium
390
liver
335
kidney
327
heart
286
brain
170
vasculature
164
blood vessel
159
bone element
122
limb
96
musculature of body
75
artery
61
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
16
skeleton
8
blood
8
bodily fluid
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
385
AMP
47
KPMP
Genome assembly (visualization)
246
GRCh38
190
hg19
Lab
243
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
Audit category:
17
inconsistent ontology term
8
audit script error
biosample_type!
cell line
BIOSAMPLE
ASSAY
432 results
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DNase-seq
ChIP-seq
ATAC-seq
single cell RNA-seq
total RNA-seq
RRBS
Hi-C
snATAC-seq
small RNA-seq
snDrop-seq
RNA microarray
FAIRE-seq
WGBS
pCHi-C
tissue
kidney
13
27
75
64
49
1
1
6
1
skeletal muscle tissue
22
1
1
1
4
1
1
muscle of leg
13
7
1
muscle of arm
17
renal cortex interstitium
11
+ See 19 more…
primary cell
epithelial cell of proximal tubule
1
10
1
1
skeletal muscle satellite cell
8
1
1
kidney epithelial cell
1
5
1
1
kidney tubule cell
3
1
skeletal muscle cell
1
2
1
+ See 5 more…
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