Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
DNase-seq
ATAC-seq
64
single cell RNA-seq
56
total RNA-seq
42
ChIP-seq
6
snATAC-seq
4
RRBS
3
snDrop-seq
2
RNA microarray
2
pCHi-C
1
FAIRE-seq
1
Hi-C
1
small RNA-seq
Assay category
121
Transcription
87
DNA accessibility
42
DNA binding
4
DNA methylation
1
3D chromatin structure
Target of assay
30
histone
30
histone modification
15
broad histone mark
15
narrow histone mark
9
control
3
RNA binding protein
3
transcription factor
Date released
81
June, 2019
64
August, 2021
47
September, 2023
23
April, 2019
15
October, 2019
11
July, 2019
8
February, 2021
5
May, 2019
3
December, 2019
3
May, 2023
1
March, 2020
1
May, 2021
Available data
129
bam
119
bigWig
111
bed narrowPeak
103
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
62
txt
19
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
262
Homo sapiens
Biosample type
226
tissue
36
primary cell
cell line
Organ
721
pancreas
659
connective tissue
485
adipose tissue
368
liver
361
epithelium
288
heart
282
brain
260
kidney
147
bone element
132
vasculature
126
blood vessel
114
limb
95
musculature of body
42
nerve
38
artery
33
eye
29
embryo
24
spleen
22
vein
20
lung
18
ureter
8
blood
8
bodily fluid
5
gonad
5
ovary
4
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
pituitary gland
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
214
AMP
47
KPMP
1
T1D
Genome assembly (visualization)
118
GRCh38
117
hg19
Lab
147
AMP-T2D consortium
67
Katalin Susztak, Upenn
47
KPMP
1
Kyle Gaulton, UCSD
Audit category:
8
inconsistent ontology term
7
audit script error
biosample_type!
cell line
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
262 results
search-icon
table-tab-icon
Clear Filters
DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
RRBS
snDrop-seq
RNA microarray
pCHi-C
FAIRE-seq
Hi-C
small RNA-seq
tissue
kidney
13
64
49
27
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 11 more…
primary cell
epithelial cell of proximal tubule
1
1
10
1
kidney epithelial cell
1
1
5
1
kidney tubule cell
3
1
kidney glomerular epithelial cell
2
1
renal cortical epithelial cell
1
1
1
+ See 3 more…
See all biosamples
Download