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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
13
DNase-seq
10
total RNA-seq
8
snATAC-seq
3
RRBS
2
STARR-seq
pCHi-C
1
ATAC-seq
Assay category
85
DNA binding
22
DNA accessibility
10
Transcription
3
DNA methylation
Target of assay
60
transcription factor
12
RNA binding protein
12
control
11
histone
11
histone modification
10
chromatin remodeller
7
recombinant protein
6
narrow histone mark
5
broad histone mark
Date released
27
December, 2018
26
October, 2019
18
January, 2019
15
November, 2018
13
June, 2019
8
January, 2021
7
July, 2019
5
May, 2019
2
August, 2021
1
January, 2018
Available data
106
bam
95
bigWig
84
bed narrowPeak
71
bigBed narrowPeak
60
fastq
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
10
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
122
Homo sapiens
Biosample type
tissue
78
cell line
44
primary cell
Organ
509
epithelium
441
pancreas
428
liver
133
connective tissue
103
vasculature
97
blood vessel
80
heart
69
blood
69
bodily fluid
68
artery
53
kidney
37
embryo
22
vein
21
brain
14
musculature of body
5
eye
2
adipose tissue
1
pericardium
Project
114
AMP
8
T1D
Genome assembly (visualization)
94
GRCh38
92
hg19
Lab
112
AMP-T2D consortium
8
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
Audit category:
21
inconsistent ontology term
1
inconsistent control
biosample_type!
tissue
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
122 results
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ChIP-seq
DNase-seq
total RNA-seq
snATAC-seq
RRBS
STARR-seq
ATAC-seq
cell line
GM12878
60
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
HEK293T
2
+ See 1 more…
primary cell
epithelial cell of proximal tubule
10
1
1
1
kidney epithelial cell
5
1
1
1
peripheral blood mononuclear cell
8
kidney tubule cell
3
1
kidney glomerular epithelial cell
2
1
+ See 4 more…
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