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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
85
ChIP-seq
13
DNase-seq
10
total RNA-seq
8
snATAC-seq
2
STARR-seq
2
pCHi-C
1
ATAC-seq
Assay category
85
DNA binding
22
DNA accessibility
10
Transcription
Target of assay
60
transcription factor
12
RNA binding protein
12
control
11
histone
11
histone modification
10
chromatin remodeller
7
recombinant protein
6
narrow histone mark
5
broad histone mark
Date released
27
December, 2018
26
October, 2019
18
January, 2019
15
November, 2018
13
June, 2019
8
January, 2021
5
May, 2019
4
July, 2019
2
August, 2021
2
March, 2020
1
January, 2018
Available data
106
bam
95
bigWig
84
bed narrowPeak
71
bigBed narrowPeak
60
fastq
12
tsv
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
bed bedMethyl
3
bigBed bedMethyl
Organism
121
Homo sapiens
Biosample type
tissue
80
cell line
41
primary cell
Organ
503
epithelium
441
pancreas
428
liver
136
connective tissue
102
vasculature
97
blood vessel
79
heart
69
blood
69
bodily fluid
68
artery
52
kidney
37
embryo
22
vein
20
brain
13
musculature of body
4
eye
3
adipose tissue
1
bone element
1
bone marrow
1
mammary gland
1
pericardium
Project
113
AMP
8
T1D
Genome assembly (visualization)
94
GRCh38
89
hg19
Lab
111
AMP-T2D consortium
8
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
Audit category:
22
inconsistent ontology term
1
inconsistent control
biosample_type!
tissue
files.file_type!
bed bedMethyl
BIOSAMPLE
ASSAY
121 results
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ChIP-seq
DNase-seq
total RNA-seq
snATAC-seq
STARR-seq
pCHi-C
ATAC-seq
cell line
GM12878
60
1
RCC 7860 HIF1a re-expression
4
1
RCC 7860 vector
3
1
1
RCC 7860 HIF2a over-expression
3
1
HEK293T
2
+ See 2 more…
primary cell
epithelial cell of proximal tubule
10
1
1
peripheral blood mononuclear cell
8
kidney epithelial cell
5
1
1
kidney tubule cell
3
1
kidney glomerular epithelial cell
2
1
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