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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
12
DNase-seq
6
total RNA-seq
Assay category
15
DNA binding
12
DNA accessibility
6
Transcription
Target of assay
10
histone
10
histone modification
5
broad histone mark
5
narrow histone mark
3
control
2
RNA binding protein
2
transcription factor
Date released
13
June, 2019
11
October, 2019
5
May, 2019
4
July, 2019
Available data
31
bam
28
bigWig
22
bed narrowPeak
16
bigBed narrowPeak
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
6
tsv
3
bed bedMethyl
bigBed bedMethyl
Organism
33
Homo sapiens
Biosample type
298
tissue
33
primary cell
19
cell line
Organ
400
epithelium
346
pancreas
38
connective tissue
36
vasculature
33
kidney
31
blood vessel
22
vein
20
brain
13
liver
13
musculature of body
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
33
AMP
Genome assembly (visualization)
28
GRCh38
22
hg19
Lab
33
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
files.file_type!
bigBed bedMethyl
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
DNase-seq
total RNA-seq
primary cell
epithelial cell of proximal tubule
10
1
1
kidney epithelial cell
5
1
1
kidney tubule cell
3
1
kidney glomerular epithelial cell
2
1
glomerular endothelial cell
1
1
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