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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
12
DNase-seq
7
total RNA-seq
3
RRBS
1
small RNA-seq
Assay category
15
DNA binding
12
DNA accessibility
8
Transcription
3
DNA methylation
Target of assay
10
histone
10
histone modification
5
broad histone mark
5
narrow histone mark
3
control
2
RNA binding protein
2
transcription factor
Date released
13
June, 2019
11
October, 2019
9
July, 2019
5
May, 2019
Available data
33
bam
30
bigWig
22
bed narrowPeak
16
bigBed narrowPeak
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
8
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
38
Homo sapiens
Biosample type
787
tissue
38
primary cell
19
cell line
1
in vitro differentiated cells
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
38
AMP
Genome assembly (visualization)
30
GRCh38
27
hg19
Lab
38
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
BIOSAMPLE
ASSAY
38 results
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ChIP-seq
DNase-seq
total RNA-seq
RRBS
small RNA-seq
primary cell
epithelial cell of proximal tubule
10
1
1
1
kidney epithelial cell
5
1
1
1
kidney tubule cell
3
1
kidney glomerular epithelial cell
2
1
renal cortical epithelial cell
1
1
1
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