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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
15
DNase-seq
8
total RNA-seq
4
Hi-C
3
RRBS
1
FAIRE-seq
Assay category
35
DNA binding
16
DNA accessibility
8
Transcription
4
3D chromatin structure
3
DNA methylation
Target of assay
26
histone
26
histone modification
14
broad histone mark
12
narrow histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
32
October, 2019
14
June, 2019
11
July, 2019
5
May, 2019
3
November, 2017
1
March, 2020
Available data
57
bam
51
bigWig
38
bed narrowPeak
32
bigBed narrowPeak
17
bed broadPeak
17
bigBed broadPeak
15
bed bed3+
8
tsv
3
bed bedMethyl
3
bigBed bedMethyl
3
fastq
2
hdf5
2
hic
1
bedpe bed3+
1
tar
Organism
66
Homo sapiens
Biosample type
432
tissue
85
cell line
66
primary cell
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
66
AMP
Genome assembly (visualization)
50
hg19
45
GRCh38
Lab
66
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
BIOSAMPLE
ASSAY
66 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
RRBS
FAIRE-seq
primary cell
endothelial cell of umbilical vein
17
2
2
1
epithelial cell of proximal tubule
10
1
1
1
kidney epithelial cell
5
1
1
1
brain microvascular endothelial cell
3
1
1
kidney tubule cell
3
1
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