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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
ChIP-seq
15
DNase-seq
8
total RNA-seq
4
Hi-C
RRBS
1
FAIRE-seq
Assay category
35
DNA binding
16
DNA accessibility
8
Transcription
4
3D chromatin structure
Target of assay
26
histone
26
histone modification
14
broad histone mark
12
narrow histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
32
October, 2019
14
June, 2019
8
July, 2019
5
May, 2019
3
November, 2017
1
March, 2020
Available data
57
bam
51
bigWig
38
bed narrowPeak
32
bigBed narrowPeak
17
bed broadPeak
17
bigBed broadPeak
15
bed bed3+
8
tsv
3
fastq
2
hdf5
2
hic
1
bedpe bed3+
1
tar
Organism
63
Homo sapiens
Biosample type
431
tissue
85
cell line
63
primary cell
Organ
400
epithelium
346
pancreas
38
connective tissue
36
vasculature
33
kidney
31
blood vessel
22
vein
20
brain
13
liver
13
musculature of body
12
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
63
AMP
Genome assembly (visualization)
47
hg19
45
GRCh38
Lab
63
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
1
audit script error
assay_title!
RRBS
BIOSAMPLE
ASSAY
63 results
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ChIP-seq
DNase-seq
total RNA-seq
Hi-C
FAIRE-seq
primary cell
endothelial cell of umbilical vein
17
2
2
1
epithelial cell of proximal tubule
10
1
1
kidney epithelial cell
5
1
1
brain microvascular endothelial cell
3
1
1
kidney tubule cell
3
1
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