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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
18
ChIP-seq
13
DNase-seq
6
total RNA-seq
4
RRBS
Assay category
18
DNA binding
13
DNA accessibility
6
Transcription
4
DNA methylation
Target of assay
11
histone
11
histone modification
6
narrow histone mark
5
broad histone mark
4
control
3
RNA binding protein
3
transcription factor
Date released
17
June, 2019
11
October, 2019
8
July, 2019
5
May, 2019
Available data
35
bam
31
bigWig
25
bed narrowPeak
19
bigBed narrowPeak
11
bed bed3+
11
bed broadPeak
11
bigBed broadPeak
6
tsv
4
bed bedMethyl
4
bigBed bedMethyl
Organism
41
Homo sapiens
Biosample type
355
tissue
41
primary cell
19
cell line
Organ
406
epithelium
346
pancreas
39
connective tissue
37
vasculature
36
kidney
31
blood vessel
22
vein
21
brain
14
liver
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
41
AMP
Genome assembly (visualization)
31
GRCh38
29
hg19
Lab
41
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
organ_slims!
musculature of body
BIOSAMPLE
ASSAY
41 results
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ChIP-seq
DNase-seq
total RNA-seq
RRBS
primary cell
epithelial cell of proximal tubule
10
1
1
1
kidney epithelial cell
5
1
1
1
retinal pigment epithelial cell
3
1
1
kidney tubule cell
3
1
kidney glomerular epithelial cell
2
1
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