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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
DNase-seq
6
total RNA-seq
5
ChIP-seq
3
RRBS
Assay category
12
DNA accessibility
6
Transcription
5
DNA binding
3
DNA methylation
Target of assay
10
histone
histone modification
5
broad histone mark
5
narrow histone mark
3
control
2
RNA binding protein
2
transcription factor
Date released
12
June, 2019
7
July, 2019
5
October, 2019
2
May, 2019
Available data
21
bam
18
bigWig
12
bed narrowPeak
12
bigBed narrowPeak
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
6
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
26
Homo sapiens
Biosample type
279
tissue
26
primary cell
19
cell line
Organ
340
epithelium
288
pancreas
31
connective tissue
26
kidney
20
vasculature
18
brain
15
blood vessel
11
heart
11
liver
8
blood
8
bodily fluid
7
vein
6
musculature of body
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
26
AMP
Genome assembly (visualization)
18
GRCh38
15
hg19
Lab
26
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
26 results
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DNase-seq
total RNA-seq
ChIP-seq
RRBS
primary cell
epithelial cell of proximal tubule
1
1
3
1
kidney epithelial cell
1
1
2
1
kidney tubule cell
3
1
kidney glomerular epithelial cell
2
1
renal cortical epithelial cell
1
1
1
glomerular endothelial cell
1
1
glomerular visceral epithelial cell
2
kidney capillary endothelial cell
1
See all biosamples
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