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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
49
total RNA-seq
6
snATAC-seq
RRBS
3
snDrop-seq
2
DNase-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
Hi-C
Assay category
113
Transcription
83
DNA accessibility
1
3D chromatin structure
Date released
130
August, 2021
47
September, 2023
14
May, 2023
8
February, 2021
3
December, 2019
2
March, 2020
2
October, 2019
Available data
183
bed narrowPeak
bam
131
bigWig
104
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
24
tsv
5
csv
1
hic
Organism
206
Homo sapiens
Biosample type
200
tissue
4
cell line
2
primary cell
Organ
255
pancreas
206
kidney
201
epithelium
140
heart
108
liver
93
bone element
90
connective tissue
53
eye
50
blood vessel
50
vasculature
49
adipose tissue
41
brain
39
artery
34
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
159
AMP
47
KPMP
Genome assembly (visualization)
75
GRCh38
1
hg19
Lab
142
Katalin Susztak, Upenn
47
KPMP
15
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
7
audit script error
2
inconsistent ontology term
files.file_type!
bam
assay_title!
RRBS
BIOSAMPLE
ASSAY
206 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
snDrop-seq
DNase-seq
RNA microarray
STARR-seq
pCHi-C
Hi-C
tissue
kidney
75
64
49
6
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
+ See 1 more…
cell line
HEK293T
2
RCC 7860 VHL
1
RCC 7860 vector
1
primary cell
kidney glomerular epithelial cell
1
kidney tubule cell
1
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