Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
110
ATAC-seq
66
single cell RNA-seq
51
total RNA-seq
6
snATAC-seq
RRBS
3
snDrop-seq
2
DNase-seq
2
RNA microarray
2
STARR-seq
2
pCHi-C
1
Hi-C
Assay category
118
DNA accessibility
117
Transcription
1
3D chromatin structure
Date released
132
August, 2021
47
September, 2023
35
February, 2023
14
May, 2023
8
February, 2021
3
December, 2019
2
February, 2020
2
March, 2020
2
October, 2019
Available data
257
bed narrowPeak
bam
216
bigWig
129
bigBed narrowPeak
82
bed bed3+
82
bed broadPeak
82
bigBed broadPeak
82
tsv
64
xls
62
txt
6
tagAlign
5
csv
1
hic
Organism
245
Homo sapiens
Biosample type
239
tissue
4
cell line
2
primary cell
Organ
255
pancreas
206
kidney
201
epithelium
180
heart
108
liver
93
bone element
90
connective tissue
53
eye
50
blood vessel
50
vasculature
49
adipose tissue
41
brain
39
artery
34
musculature of body
20
lung
9
blood
9
bodily fluid
8
limb
8
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
2
vein
1
adrenal gland
1
bone marrow
1
embryo
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
nerve
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
spleen
1
stomach
1
urinary bladder
Project
198
AMP
47
KPMP
Genome assembly (visualization)
110
GRCh38
1
hg19
Lab
142
Katalin Susztak, Upenn
54
AMP-T2D consortium
47
KPMP
2
Bing Ren, UCSD
Audit category:
7
audit script error
2
inconsistent ontology term
files.file_type!
bam
assay_title!
RRBS
BIOSAMPLE
ASSAY
245 results
search-icon
table-tab-icon
Clear Filters
ATAC-seq
single cell RNA-seq
total RNA-seq
snATAC-seq
snDrop-seq
DNase-seq
RNA microarray
STARR-seq
pCHi-C
Hi-C
tissue
kidney
75
64
49
6
1
coronary artery
35
1
pulmonary artery
2
kidney (Cortex-Medulla)
1
kidney (cortex)
1
+ See 4 more…
cell line
HEK293T
2
RCC 7860 VHL
1
RCC 7860 vector
1
primary cell
kidney glomerular epithelial cell
1
kidney tubule cell
1
See all biosamples
Download