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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
246
ChIP-seq
79
ATAC-seq
71
total RNA-seq
64
single cell RNA-seq
6
snATAC-seq
5
small RNA-seq
4
pCHi-C
3
snDrop-seq
2
FAIRE-seq
2
RNA microarray
2
RRBS
2
STARR-seq
1
DNase-seq
1
Hi-C
Assay category
246
DNA binding
140
Transcription
88
DNA accessibility
2
DNA methylation
1
3D chromatin structure
Target of assay
204
histone
204
histone modification
124
narrow histone mark
80
broad histone mark
34
control
8
transcription factor
7
recombinant protein
1
RNA binding protein
Date released
130
August, 2021
105
October, 2019
82
November, 2017
47
September, 2023
28
May, 2019
23
April, 2019
16
October, 2017
15
July, 2019
14
May, 2023
12
February, 2020
8
February, 2021
4
March, 2020
3
December, 2019
1
February, 2023
Available data
353
bed narrowPeak
339
bam
305
bigWig
204
bigBed narrowPeak
118
tagAlign
104
bed broadPeak
95
bed bed3+
bigBed broadPeak
64
xls
62
txt
41
tsv
12
fastq
5
csv
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
hic
1
tagAlign bed3+
Organism
488
Homo sapiens
Biosample type
469
tissue
primary cell
19
cell line
Organ
716
liver
642
connective tissue
593
pancreas
487
adipose tissue
353
heart
250
kidney
238
brain
194
blood vessel
194
vasculature
158
bone element
135
artery
118
epithelium
86
limb
61
blood
61
bodily fluid
53
eye
50
musculature of body
41
nerve
37
embryo
24
spleen
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
441
AMP
47
KPMP
Genome assembly (visualization)
285
GRCh38
163
hg19
Lab
297
AMP-T2D consortium
142
Katalin Susztak, Upenn
47
KPMP
2
Bing Ren, UCSD
Audit category:
18
inconsistent ontology term
7
audit script error
Audit category:
4
missing controlled_by
files.file_type!
bigBed broadPeak
biosample_type!
primary cell
BIOSAMPLE
ASSAY
488 results
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ChIP-seq
ATAC-seq
total RNA-seq
single cell RNA-seq
snATAC-seq
small RNA-seq
pCHi-C
snDrop-seq
FAIRE-seq
RNA microarray
RRBS
STARR-seq
DNase-seq
Hi-C
tissue
kidney
27
75
49
64
6
1
1
1
brain
20
1
1
1
layer of hippocampus
23
substantia nigra
16
1
temporal lobe
15
1
1
+ See 79 more…
cell line
RCC 7860 HIF1a re-expression
4
1
RCC 7860 vector
3
1
1
RCC 7860 HIF2a over-expression
3
1
HEK293T
2
glomerular visceral epithelial cell
1
1
+ See 1 more…
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