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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
78
DNase-seq
31
ChIP-seq
5
total RNA-seq
1
FAIRE-seq
1
small RNA-seq
Assay category
79
DNA accessibility
31
DNA binding
6
Transcription
Target of assay
22
histone
22
histone modification
12
broad histone mark
10
narrow histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
81
June, 2019
October, 2019
23
April, 2019
7
July, 2019
5
May, 2019
Available data
167
bed narrowPeak
116
bam
109
bigWig
103
bigBed narrowPeak
78
bed bed3+
78
bed broadPeak
78
bigBed broadPeak
64
xls
62
txt
18
tsv
5
csv
4
bed bedMethyl
4
bigBed bedMethyl
1
hic
Organism
116
Homo sapiens
Biosample type
94
tissue
22
primary cell
Organ
675
pancreas
674
liver
593
connective tissue
442
adipose tissue
285
epithelium
204
heart
160
brain
139
vasculature
134
blood vessel
116
kidney
76
artery
66
bone element
60
blood
60
bodily fluid
57
musculature of body
46
limb
36
embryo
24
spleen
18
ureter
skeleton
7
eye
1
pericardium
Project
116
AMP
Genome assembly (visualization)
108
GRCh38
102
hg19
Lab
116
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
organ_slims!
skeleton
month_released!
October, 2019
BIOSAMPLE
ASSAY
116 results
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DNase-seq
ChIP-seq
total RNA-seq
FAIRE-seq
small RNA-seq
tissue
kidney
13
23
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 5 more…
primary cell
kidney epithelial cell
1
5
1
epithelial cell of proximal tubule
1
3
1
glomerular endothelial cell
1
1
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 3 more…
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