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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
97
ChIP-seq
69
DNase-seq
5
total RNA-seq
1
FAIRE-seq
1
small RNA-seq
Assay category
97
DNA binding
70
DNA accessibility
6
Transcription
Target of assay
59
transcription factor
21
histone
21
histone modification
15
control
11
RNA binding protein
11
narrow histone mark
10
broad histone mark
10
chromatin remodeller
7
recombinant protein
Date released
68
June, 2019
27
December, 2018
23
April, 2019
19
October, 2019
18
January, 2019
15
November, 2018
3
July, 2019
Available data
215
bed narrowPeak
173
bam
158
bigWig
142
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
60
fastq
18
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
173
Homo sapiens
Biosample type
98
tissue
75
cell line
primary cell
Organ
669
liver
557
connective tissue
495
pancreas
440
adipose tissue
226
brain
199
heart
153
blood vessel
153
vasculature
114
limb
113
kidney
100
artery
75
epithelium
66
bone element
60
blood
60
bodily fluid
44
musculature of body
42
nerve
36
embryo
24
spleen
18
ureter
8
skeleton
3
eye
1
pituitary gland
Project
173
AMP
Genome assembly (visualization)
156
GRCh38
156
hg19
Lab
173
AMP-T2D consortium
Audit category:
13
inconsistent ontology term
1
inconsistent control
biosample_type!
primary cell
BIOSAMPLE
ASSAY
173 results
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ChIP-seq
DNase-seq
total RNA-seq
FAIRE-seq
small RNA-seq
tissue
kidney
27
13
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 5 more…
cell line
GM12878
60
RCC 7860 HIF1a re-expression
4
1
RCC 7860 HIF2a over-expression
3
1
RCC 7860 vector
3
1
glomerular visceral epithelial cell
1
1
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