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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
DNase-seq
3
ChIP-seq
2
Hi-C
Assay category
84
DNA accessibility
3
DNA binding
2
3D chromatin structure
Target of assay
3
histone
3
histone modification
2
narrow histone mark
1
broad histone mark
Date released
82
June, 2019
3
August, 2021
2
July, 2019
2
October, 2019
Available data
428
bam
402
bigWig
311
bed narrowPeak
257
fastq
172
tsv
163
bigBed narrowPeak
90
bed broadPeak
90
bigBed broadPeak
89
bed bed3+
80
zippedFastqFolder
64
xls
62
txt
7
bed bedMethyl
7
bigBed bedMethyl
7
hic
7
tagAlign
5
bedpe bed3+
5
csv
3
cool
2
hdf5
1
tar
Organism
89
Homo sapiens
Biosample type
68
tissue
21
primary cell
Organ
78
kidney
36
limb
35
brain
34
musculature of body
30
heart
29
pancreas
27
connective tissue
21
epithelium
18
ureter
13
liver
13
vasculature
11
blood vessel
6
adipose tissue
4
artery
4
eye
3
embryo
2
nerve
2
vein
1
spleen
Project
89
AMP
Genome assembly (visualization)
87
GRCh38
82
hg19
Lab
89
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
BIOSAMPLE
ASSAY
89 results
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Clear Filters
DNase-seq
ChIP-seq
Hi-C
tissue
kidney
13
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 4 more…
primary cell
hepatocyte
1
3
brain microvascular endothelial cell
1
1
endothelial cell of umbilical vein
2
glomerular visceral epithelial cell
2
kidney tubule cell
2
+ See 9 more…
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