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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
68
DNase-seq
27
ChIP-seq
3
snDrop-seq
1
FAIRE-seq
1
RRBS
1
single cell RNA-seq
1
small RNA-seq
1
total RNA-seq
Assay category
69
DNA accessibility
27
DNA binding
3
Transcription
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
6
control
1
RNA binding protein
1
transcription factor
Date released
68
June, 2019
23
April, 2019
4
July, 2019
4
October, 2019
3
February, 2021
1
December, 2019
Available data
98
bam
91
bigWig
89
bed narrowPeak
87
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
5
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
103
Homo sapiens
Biosample type
103
tissue
36
primary cell
17
cell line
Organ
547
connective tissue
488
adipose tissue
441
pancreas
321
liver
273
heart
265
brain
158
bone element
133
blood vessel
133
vasculature
122
limb
103
kidney
81
musculature of body
73
artery
56
eye
43
nerve
25
spleen
18
ureter
16
skeleton
14
epithelium
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
thymus
1
urinary bladder
Project
103
AMP
Genome assembly (visualization)
91
hg19
90
GRCh38
Lab
142
Katalin Susztak, Upenn
103
AMP-T2D consortium
47
KPMP
Audit category:
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audit script error
BIOSAMPLE
ASSAY
103 results
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DNase-seq
ChIP-seq
snDrop-seq
FAIRE-seq
RRBS
single cell RNA-seq
small RNA-seq
total RNA-seq
tissue
kidney
13
27
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
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