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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
DNase-seq
8
ChIP-seq
4
total RNA-seq
3
RRBS
2
pCHi-C
Assay category
10
DNA accessibility
8
DNA binding
4
Transcription
3
DNA methylation
Target of assay
4
histone
4
histone modification
2
RNA binding protein
2
broad histone mark
2
control
2
narrow histone mark
2
transcription factor
Date released
October, 2019
13
June, 2019
7
July, 2019
5
May, 2019
2
March, 2020
Available data
22
bam
20
bigWig
16
bed narrowPeak
16
bigBed narrowPeak
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
6
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
27
Homo sapiens
Biosample type
tissue
25
primary cell
2
cell line
Organ
398
liver
316
epithelium
268
pancreas
130
connective tissue
82
vasculature
80
heart
76
blood vessel
68
artery
61
blood
61
bodily fluid
37
embryo
27
kidney
21
brain
14
musculature of body
5
eye
3
adipose tissue
1
mammary gland
1
pericardium
1
vein
Project
27
AMP
Genome assembly (visualization)
20
GRCh38
17
hg19
Lab
27
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
10
inconsistent ontology term
month_released!
October, 2019
biosample_type!
tissue
BIOSAMPLE
ASSAY
27 results
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DNase-seq
ChIP-seq
total RNA-seq
RRBS
pCHi-C
primary cell
kidney epithelial cell
1
5
1
1
epithelial cell of proximal tubule
1
3
1
1
renal cortical epithelial cell
1
1
1
glomerular endothelial cell
1
1
glomerular visceral epithelial cell
2
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cell line
RCC 7860 VHL
1
RCC 7860 vector
1
See all biosamples
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