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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
10
DNase-seq
8
ChIP-seq
4
total RNA-seq
3
RRBS
Assay category
10
DNA accessibility
8
DNA binding
4
Transcription
3
DNA methylation
Target of assay
4
histone
4
histone modification
2
RNA binding protein
2
broad histone mark
2
control
2
narrow histone mark
2
transcription factor
Date released
13
June, 2019
October, 2019
7
July, 2019
5
May, 2019
Available data
22
bam
20
bigWig
16
bed narrowPeak
16
bigBed narrowPeak
10
bed bed3+
10
bed broadPeak
10
bigBed broadPeak
4
tsv
3
bed bedMethyl
3
bigBed bedMethyl
Organism
25
Homo sapiens
Biosample type
295
tissue
25
primary cell
4
cell line
Organ
373
epithelium
346
pancreas
39
connective tissue
25
kidney
21
brain
16
vasculature
14
musculature of body
13
heart
13
liver
10
blood vessel
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
1
vein
Project
25
AMP
Genome assembly (visualization)
20
GRCh38
17
hg19
Lab
25
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
month_released!
October, 2019
BIOSAMPLE
ASSAY
25 results
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DNase-seq
ChIP-seq
total RNA-seq
RRBS
primary cell
kidney epithelial cell
1
5
1
1
epithelial cell of proximal tubule
1
3
1
1
renal cortical epithelial cell
1
1
1
glomerular endothelial cell
1
1
glomerular visceral epithelial cell
2
kidney tubule cell
2
kidney capillary endothelial cell
1
kidney glomerular epithelial cell
1
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