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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
68
DNase-seq
64
single cell RNA-seq
53
total RNA-seq
37
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
STARR-seq
1
FAIRE-seq
1
Hi-C
1
RNA microarray
1
RRBS
1
small RNA-seq
Assay category
150
DNA accessibility
118
Transcription
37
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
20
histone
20
histone modification
10
broad histone mark
10
narrow histone mark
9
control
8
transcription factor
7
recombinant protein
1
RNA binding protein
Date released
130
August, 2021
68
June, 2019
47
September, 2023
23
April, 2019
17
October, 2019
14
May, 2023
8
February, 2021
4
July, 2019
2
December, 2019
March, 2020
Available data
160
bed narrowPeak
111
bam
101
bigWig
87
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
14
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
313
Homo sapiens
Biosample type
298
tissue
15
cell line
Organ
932
pancreas
788
liver
682
connective tissue
epithelium
490
adipose tissue
352
kidney
346
heart
284
brain
232
vasculature
226
blood vessel
159
bone element
141
artery
122
limb
91
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
24
spleen
21
vein
19
lung
18
ureter
16
skeleton
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
bone marrow
1
lymph node
1
skin of body
1
spinal cord
1
thymus
Project
266
AMP
47
KPMP
Genome assembly (visualization)
175
GRCh38
102
hg19
Lab
142
Katalin Susztak, Upenn
122
AMP-T2D consortium
47
KPMP
2
Bing Ren, UCSD
Audit category:
13
inconsistent ontology term
6
audit script error
month_released!
March, 2020
organ_slims!
epithelium
BIOSAMPLE
ASSAY
313 results
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ATAC-seq
DNase-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
STARR-seq
FAIRE-seq
Hi-C
RNA microarray
RRBS
small RNA-seq
tissue
kidney
75
13
64
49
27
6
1
1
1
renal cortex interstitium
11
renal pelvis
10
right kidney
10
left kidney
9
+ See 9 more…
cell line
RCC 7860 HIF1a re-expression
1
4
RCC 7860 HIF2a over-expression
1
3
RCC 7860 vector
1
3
HEK293T
2
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