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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
75
ATAC-seq
64
single cell RNA-seq
50
total RNA-seq
9
ChIP-seq
6
snATAC-seq
3
snDrop-seq
2
RNA microarray
1
Hi-C
1
RRBS
1
small RNA-seq
Assay category
115
Transcription
81
DNA accessibility
9
DNA binding
1
3D chromatin structure
1
DNA methylation
Target of assay
6
control
2
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
128
August, 2021
47
September, 2023
14
May, 2023
8
February, 2021
5
April, 2019
4
October, 2019
3
December, 2019
3
July, 2019
Available data
153
bed narrowPeak
98
bam
91
bigWig
bigBed narrowPeak
68
bed bed3+
68
bed broadPeak
68
bigBed broadPeak
64
xls
62
txt
12
tsv
5
csv
1
bed bedMethyl
1
bigBed bedMethyl
1
hic
Organism
212
Homo sapiens
Biosample type
212
tissue
20
primary cell
18
cell line
Organ
537
connective tissue
478
adipose tissue
443
pancreas
312
liver
225
heart
212
kidney
158
bone element
149
brain
71
blood vessel
71
vasculature
53
eye
48
artery
44
musculature of body
38
limb
20
lung
17
nerve
16
skeleton
15
epithelium
12
spleen
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
spinal cord
1
stomach
1
urinary bladder
Project
165
AMP
47
KPMP
Genome assembly (visualization)
79
GRCh38
6
hg19
Lab
142
Katalin Susztak, Upenn
47
KPMP
23
AMP-T2D consortium
Audit category:
7
audit script error
organ_slims!
spinal cord
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
212 results
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ATAC-seq
single cell RNA-seq
total RNA-seq
ChIP-seq
snATAC-seq
snDrop-seq
RNA microarray
Hi-C
RRBS
small RNA-seq
tissue
kidney
75
64
49
9
6
1
1
metanephros
1
1
kidney (Cortex-Medulla)
1
kidney (cortex)
1
kidney (medulla)
1
kidney interstitium
1
renal glomerulus
1
See all biosamples
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